The complete mitochondrial genome of <i>Parachiloglanis hodgarti</i> and its phylogenetic position within Sisoridae -- Journal of Oceanology and Limnology,2023,41(1):267-279

	Cite this paper:
	Jiasheng LI, Ying PENG, Shufei ZHANG, Yifan LIU, Kun ZHANG, Jian CHEN, Hua ZHANG, Chi ZHANG, Bingjian LIU. The complete mitochondrial genome of Parachiloglanis hodgarti and its phylogenetic position within Sisoridae[J]. Journal of Oceanology and Limnology, 2023, 41(1): 267-279

The complete mitochondrial genome of Parachiloglanis hodgarti and its phylogenetic position within Sisoridae

Jiasheng LI¹, Ying PENG¹, Shufei ZHANG³, Yifan LIU¹, Kun ZHANG¹, Jian CHEN¹, Hua ZHANG⁴, Chi ZHANG², Bingjian LIU¹

1 National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan 316022, China;
2 Institute of Fisheries Science, Tibet Academy of Agricultural and Animal Husbandry Sciences, Lhasa 850000, China;
3 Guangdong Provincial Key Laboratory of Fishery Ecology and Environment;South China Sea Fisheries Research Institute, Chinese Academy of Fisheries Sciences, Guangzhou 510300, China;
4 Key Laboratory of Tropical Marine Bio-resources and Ecology, Chinese Academy of Sciences, Guangzhou 510301, China

Abstract:

The complete mitogenome of Parachiloglanis hodgarti was sequenced and characterized, which is the first mitogenome of the genus Parachiloglanis within Sisoridae. The mitogenome is 16 511-bp long and included 13 protein-coding genes, 22 transfer RNAs, two ribosomal RNAs, and one control region. The genome composition was A+T biased (58.64%) and exhibited a positive AT-skew (0.095) and a negative GC-skew (-0.283). Compared with other Sisoridae fishes, the characteristics of nucleotide skews, codon usage, and amino acid usage of the P. hodgarti mitogenome are more similar to those of non-Glyptosternoid fishes. Furthermore, the phylogenetic trees show that Sisoridae fishes fall into four major clades and P. hodgarti (Clade I) is basal to the Sisoridae family, forming a sister clade to the Glyptosternoids (Clade IV). The topological structures constructed in this study raised doubts over the traditional classification system. These results will help better understand the features of the P. hodgarti mitogenome and provide a reference for further phylogenetic research on Sisoridae species.

Key words: Parachiloglanis hodgarti|mitogenomes|Sisoridae|glyptosternoids|phylogenetic relationship

Received: 2021-10-12 Revised:

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Articles by Ying PENG

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Articles by Yifan LIU

Articles by Kun ZHANG

Articles by Jian CHEN

Articles by Hua ZHANG

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Articles by Bingjian LIU

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